When you issue the Compose With DITA-OT command, you can specify a composition profile for each output type.
In the Compose Output dialog, after you select the DITA-OT version and the output type or types, you can set a composition profile for each output type selected. See Composing Output with DITA-OT.
Tip: You can select a composition profile for a DITA-OT version that was created for a different DITA-OT version without any issue. If they use the same parameters, they will be used during composition. Even if they support only some of the same parameters, any unsupported parameters will be ignored by the DITA-OT, but processing will honor the supported parameters.